BiologyEnvironmental ScienceMedicine

Seung Hyun Yoo, Jeong Gyu Kim, Ha Eun Lee, Yong Jun Park, Y. Seo, Mi Jeong Jo, Jong-Oh Kim, G. Kim

2026.1.9BMC Genomic Data

DOI: 10.1186/s12863-026-01405-x

tlooto Summary

A hemocyte transcriptome dataset following stimulation with Polyinosinic: polycytidylic acid (poly[I: C]), a synthetic analog of viral double-stranded RNA, offers a molecular basis for assessing immune-related genes and pathways in abalone.

Abstract

Haliotis discus hannai, a primary aquaculture species in East Asia, is highly susceptible to viral infections, such as abalone herpesvirus. To facilitate the understanding of antiviral immune mechanisms, we generated a hemocyte transcriptome dataset following stimulation with Polyinosinic: polycytidylic acid (poly[I: C]), a synthetic analog of viral double-stranded RNA. This dataset offers a molecular basis for assessing immune-related genes and pathways in abalone. Adult abalones were injected with poly(I:C), and hemocytes were collected at 2 and 7 days post-infection, along with uninfected controls. Total RNA was extracted and sequenced using the Illumina paired-end platform. After quality filtering, de novo assembly with Trinity produced 281,050 transcripts and 214,676 unigenes (N50: 722 bp and GC content: 41.06%). Open reading frames predicted by TransDecoder yielded 18,371 coding sequences. Functional annotation against Non-Redundant Protein, Universal Protein Resource, Protein Families, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes databases identified numerous immune-related genes The raw reads, assembled transcriptome, and annotation files are publicly available in the National Center for Biotechnology Information Sequence Read Archive and Figshare, providing a valuable reference for future studies on the innate immunity of H. discus hannai.

Citation format

YOO, Seung Hyun, et al. De novo transcriptome assembly of hemocytes from haliotis discus hannai following poly(i:c) stimulation. BMC Genomic Data, 2026, 27(1): 15.