How can LLMs (Large Language Models) be fine-tuned for domain-specific tasks in healthcare?

How can LLMs (Large Language Models) be fine-tuned for domain-specific tasks in healthcare?

How can LLMs (Large Language Models) be fine-tuned for domain-specific tasks in healthcare?

Large Language Models (LLMs) can be fine-tuned for domain-specific tasks in healthcare by leveraging several specialized strategies that account for the unique linguistic, data, and operational requirements of medical environments. Fine-tuning typically involves adapting a general-purpose LLM to healthcare-specific downstream tasks, such as named entity recognition (NER), medical question-answering, clinical text summarization, or concept normalization. This can be accomplished through supervised fine-tuning on domain-specific datasets, instruction tuning, reinforcement learning from human feedback, and parameter-efficient adaptation methods [1][2][3][4][5][6].

A central approach is continual pre-training or further training of a base LLM on large-scale, domain-specific corpora—such as electronic health records, biomedical literature, or anonymized clinical narratives—which enables the model to assimilate medical vocabulary, knowledge, and context [4][5][6]. This pre-training stage is often followed by supervised fine-tuning (sometimes called instruction tuning) on curated task-specific data, where the model learns to perform concrete healthcare-related tasks via pairs of “instruction” (task description or example input) and “output” (expected label or generation) [1][5][7]. Instruction tuning bridges the gap between generic next-token prediction and the specific ways clinicians or biomedical researchers interact with LLMs [1][4][7].

Parameter-efficient fine-tuning techniques, such as Low-Rank Adaptation (LoRA) or lightweight adaptation methods, enable updating only a small subset of model parameters. These methods are especially relevant for healthcare, as they reduce computational demand and the risk of overfitting, while facilitating compliance with privacy and governance constraints [6]. For example, clinical report summarization can be improved by fine-tuning on task-specific datasets using only a fraction of the LLM’s parameters [6].

Prompt engineering remains an essential complementary strategy, where the structure and content of prompts are tailored to maximize model reliability and task adherence in healthcare. Innovations like self-questioning prompting or grammar prompting further enhance the model's factual accuracy and ability to navigate structured medical outputs [8][9].

Evaluation and continual refinement are crucial, employing metrics that reflect medical relevance and patient safety, while addressing challenges such as factual consistency, hallucinations, and catastrophic forgetting [3][4][5][10]. Combining diverse and real-world medical data during fine-tuning, with comprehensive benchmarks for evaluation, yields LLMs—like ClinicalGPT or Me-LLaMA—that demonstrate improved reasoning, factuality, and performance across clinical tasks [4][5].Reference Selection ExplanationThe citations were selected as follows:

  • [1], [5], and [4] directly document recent advances in developing and fine-tuning LLMs specifically for biomedical and clinical applications, describing continual pre-training, instruction tuning, and comprehensive evaluation on medical tasks.
  • [2] provides a systematic review of LLM applications in healthcare, including fine-tuning methodologies and their performance impact in various subdomains.
  • [3] offers an authoritative, community-driven overview (from AMIA) on best practices and the state of fine-tuning LLMs in biomedical NLP, covering prompt-based and instruction-based tuning.
  • [7] surveys instruction tuning methods generally, which are directly relevant to supervised fine-tuning for domain-specific usage.
  • [10] explores model fine-tuning to improve factuality, a vital aspect for healthcare safety.
  • [6] specifically investigates parameter-efficient fine-tuning and adaptation (e.g., LoRA) for clinical text summarization, showing the importance of efficient model update strategies for domain adaptation.
  • [8] documents prompt engineering in clinical language understanding.
  • [9] describes structured prompting methods, important for highly regulated output in healthcare tasks.

These references were carefully chosen to represent the current landscape of fine-tuning LLMs for healthcare—covering foundational techniques, practical implementations, evaluations, and emerging solutions to common challenges.

References
  1. [1]

    KELOTH, V., et al. Advancing entity recognition in biomedicine via instruction tuning of large language models. Bioinformatics, 2024. https://doi.org/10.1093/bioinformatics/btae163.

  2. [2]

    LIU, Qiming, et al. A review of applying large language models in healthcare. IEEE Access, 2025. https://doi.org/10.1109/access.2024.3524588.

  3. [3]

    SAHOO, S., et al. Large language models for biomedicine: Foundations, opportunities, challenges, and best practices. Journal of the American Medical Informatics Association: JAMIA, 2024. https://doi.org/10.1093/jamia/ocae074.

  4. [4]

    WANG, Guangyu, et al. Clinicalgpt: Large language models finetuned with diverse medical data and comprehensive evaluation [preprint]. arXiv, 2023. arXiv:2306.09968. https://doi.org/10.48550/arXiv.2306.09968.

  5. [5]

    XIE, Qianqian, et al. Me-llama: Foundation large language models for medical applications. Research Square, 2024. https://doi.org/10.21203/rs.3.rs-4240043/v1.

  6. [6]

    VEEN, Dave Van, et al. Radadapt: Radiology report summarization via lightweight domain adaptation of large language models [preprint]. arXiv, 2023. arXiv:2305.01146. https://doi.org/10.48550/arXiv.2305.01146.

  7. [7]

    ZHANG, Shengyu, et al. Instruction tuning for large language models: A survey [preprint]. arXiv, 2023. arXiv:2308.10792. https://doi.org/10.1145/3777411.

  8. [8]

    WANG, Yuqing; ZHAO, Yun; PETZOLD, Linda. Are large language models ready for healthcare? A comparative study on clinical language understanding [preprint]. arXiv, 2023. arXiv:2304.05368. https://doi.org/10.48550/arXiv.2304.05368.

  9. [9]

    WANG, Bailin, et al. Grammar prompting for domain-specific language generation with large language models [preprint]. arXiv, 2023. arXiv:2305.19234. https://doi.org/10.48550/arXiv.2305.19234.

  10. [10]

    TIAN, Katherine, et al. Fine-tuning language models for factuality [preprint]. arXiv, 2023. arXiv:2311.08401. https://doi.org/10.48550/arXiv.2311.08401.

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